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Home » Blog » Understanding Common Paystub Deductions and Useful Tips

Understanding Common Paystub Deductions and Useful Tips

Last updated March 21, 2025

Ever wonder where your hard-earned money goes before it even hits your bank account? The answer lies in your paystub deductions—those line items that break down exactly what’s withheld from your paycheck. Your paystub holds the key to understanding your true take-home pay. It includes federal and state taxes, plus contributions to Social Security, Medicare, and employee benefits.

Let’s break down those confusing payroll codes and make sense of what’s really happening behind the numbers.

Health Insurance Deductions

Healthcare premiums or contributions to a Health Savings Account (HSA) are usually deducted from employee paychecks on a pre-tax basis. This reduces your taxable income, as the deduction happens before income taxes are calculated.

The timing of these paystub deductions can vary. For example, companies with a bi-weekly pay schedule may deduct premiums in advance for the upcoming month’s coverage. Depending on the employer’s policy, deductions might appear on 24 out of 26 paychecks, or on all 26. In many cases, the pay period’s end date—not the actual dates worked—determines when the deduction occurs.

If you’re self-employed and pay healthcare premiums out-of-pocket with after-tax money, you may be able to claim them as an itemized deduction on Schedule A. This deduction is subject to the 7.5% adjusted gross income (AGI) threshold.

If your business earns a profit, you may qualify for the Self-Employed Health Insurance (SEHI) Adjustment. This adjustment can reduce your AGI directly or be claimed as an itemized deduction.

Tax Deductions

Several types of taxes are commonly withheld from your paycheck, many of which are required by law:

1) Federal Income Tax (FICA Tax): This is a portion of your earnings withheld by the federal government. The amount is based on your W-4 form elections, tax bracket, retirement contributions, and any pre-tax benefits. The W-4 helps your employer estimate the correct withholding amount to match your tax obligations.

2) Social Security Tax (FICA SS Tax): This mandatory deduction funds the Social Security program, which provides benefits to retirees, individuals with disabilities, and certain dependents.

3) Medicare Tax (FICA Med Tax): Also required under the Federal Insurance Contributions Act (FICA), this tax supports Medicare, a federal healthcare program for individuals aged 65 and older.

4) State Income Tax: Depending on where you live, your paycheck may include a deduction for state income tax. States like Texas, Florida, Nevada, Alaska, and Washington do not impose an income tax. While moving to one of these states may reduce your taxable income, be aware that other taxes—such as property taxes—may be higher.

5) State Disability Insurance (SDI): In certain states, such as California, SDI is deducted to fund programs like Paid Family Leave (PFL) and Disability Insurance (DI), which provide partial wage replacement during qualifying events like medical or family leave.

These deductions play a critical role in funding essential government programs and shaping your overall tax liability.

Retirement Account Deductions

Your paystub should clearly display the amount deducted from your gross pay for retirement contributions—such as to a 401(k) plan. These deductions are typically made on a pre-tax basis, meaning they reduce your taxable income by being withheld before income taxes are calculated.

*Practical Tip: Regularly cross-check the retirement contributions listed on your paystubs with your retirement account provider’s records.*

In one case, an employee discovered a discrepancy—years too late—that cost over $50,000 in compounded losses. They believed $575 was being deducted per paycheck based on a 15% contribution from a $100,000 salary. In reality, less than $250 was being withheld. While this may not sound particularly serious, a multitude of problems can arise:


Major Retirement Savings Shortfall

If the employee expected to save $575 per paycheck but only saved $250, that’s a $325 shortfall per pay period. Over a year with 26 pay periods, that adds up to $8,450. Over five years, that’s $42,250 in missed contributions—not including compound interest or market growth. With compounding, it’s easy to see how the loss could exceed $50,000.


Lost Investment Growth

Money not contributed to a retirement account misses out on potential growth. Assuming a moderate 7% annual return, the lost opportunity compounds over time. The earlier contributions are made, the more powerful compounding becomes—so years of under-contributing can seriously impact retirement readiness.


Potential Tax Implications

Pre-tax contributions to a 401(k) reduce taxable income. If less money is being withheld than expected, the employee may have unintentionally paid more in income taxes than necessary over several years.


Employer Match Loss (if applicable)

If the employer offers a match based on a percentage of employee contributions, the under-withholding could mean the employee also missed out on hundreds or thousands in matching funds—free money left on the table.


Corrective Challenges

Once discovered, fixing the issue can be difficult. Most plan administrators have strict contribution limits per year, so “catching up” may not be straightforward. Additionally, retroactive corrections are rare unless it was due to an employer error.


Emotional and Financial Stress

Discovering such a mistake years later can cause frustration, distrust, and financial anxiety—especially if the employee was counting on those savings for near-future retirement goals.


Other Voluntary Pre-Tax Benefits Deductions

— Cafeteria Plan Deductions: These may appear on your paystub and typically cover pre-tax benefits you’ve elected through your employer, such as health insurance, dental coverage, or dependent care.

— Group Term Life Insurance & Employer-Sponsored Pre-Tax Insurance: Premiums for group term life insurance or other eligible pre-tax insurance policies can be deducted before taxes are applied to your income. This reduces your taxable income and increases your take-home pay.

— Pre-Tax Spending Example: Purchasing a $10 necessity using pre-tax dollars can lower your taxable income. Instead of being taxed on $100, you’re taxed on $90—resulting in less tax owed and more money in your pocket.

— SEP IRA Contributions: A SEP IRA (Simplified Employee Pension) is a retirement savings option for self-employed individuals and small business owners. Contributions are made on a pre-tax basis, lowering taxable income while building retirement savings.

— Rental Property Deductions (held under an LLC): Owners of rental properties may qualify for certain write-offs. Although some investors find the tax benefits minimal, depreciation of income-producing property can still be used to reduce taxable income.

— Accelerated Depreciation for Capital-Intensive Side Businesses: If your side business requires significant upfront investment, you may be eligible to use accelerated depreciation methods. These can create early-year losses that offset other income and reduce your overall tax liability.

— Freelancer and Contractor Retirement Savings Options: Independent workers can take advantage of tax-advantaged savings plans beyond traditional 401(k)s. Options like Solo 401(k)s or SEP IRAs can allow for pre-tax contributions of up to $50,000 annually, depending on income and plan structure.

Sick Leaves

Paystubs might display deductions or accruals related to sick leave, which can vary based on state laws and company policies. Some states require employers to provide a minimum amount of paid sick leave, while others leave it up to the employer’s discretion. Your paystub may show the number of sick hours earned, used, and remaining, helping you track your available time off. In some cases, unused sick leave may roll over to the next year, while in others it might be forfeited or capped.

Taxes on Tips

For employees in the service industry who earn tips, paystubs may reflect a noticeably reduced net pay. This often happens because taxes are withheld from hourly wages to cover both wages and reported tips. Tips are considered taxable income by the IRS.

Even though cash tips are received directly, employers must still calculate and withhold taxes based on your total earnings—wages plus tips. Since the tips are already in your possession, your paycheck is adjusted so that your hourly wages cover the taxes owed. As a result, it’s common to see lower take-home pay from your actual paycheck.

It’s essential to regularly review your paystub and compare it with the tips you’ve reported to your employer. This helps ensure accuracy and avoid underreporting issues. If you notice discrepancies or have questions about your paystub deductions, contact your HR department. If you don’t have one, speak with a payroll or benefits specialist who understands your employer’s policies.

In Summary

Understanding your paystub deductions is essential for ensuring accuracy and maximizing your take-home pay. From mandatory withholdings like federal and state taxes to voluntary contributions for benefits and retirement, every line on your paystub matters. If you spot any discrepancies, don’t hesitate to reach out to your HR department or payroll provider for clarification.

Looking to take control of your finances and better track your deductions? Use FormPros to easily generate professional paystubs online. It’s a quick and reliable way to ensure all deductions are accurately calculated—so you can stay informed, compliant, and confident in your earnings.

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Mark Mogilnitsky

Mark Mogilnitsky is a content writer specializing in Financial Form Generation, with a passion for simplifying complex processes for individuals and businesses. I thrive on crafting clear, engaging content that empowers users to navigate compliance and documentation with ease.

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